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Day thirty-four

06 Jan 2019

Alicia’s experiment:

First, I would like to thank our Doc, Rich Harper, for spending his free day helping us. We worked about seven hours in the backyard today. It was really fun and he kept us entertained with many stories!

Doc entertaining us

What we did today was to start soil incubations. We collected four intact soil cores from each plot carefully. We capped the bottom, after which they received a water treatment. We then capped the top to prevent evaporation and we reinserted them in the same spot where the core was taken.

In the photo below, Doc is collecting the cores while Kelly is capping the bottom. I then labeled the cores, after which Alicia added the water and capped the top.

Smooth workflow

So, what is the water treatment? One pair of soil cores received highly purified water (H2O) that contains mostly oxygen-16 (so, it really is regular water with all the salts and other compounds removed - as pure as water gets!). The other pair of soil cores would receive water that contains a heavier oxygen isotope: oxygen-18!

The bottle shown in the four panel photo below (top left) is the “heavy water” and this tiny bottle costs $1200! This heavy water is not dangerous in that the oxygen it contains is a natural, stable isotope (so not radioactive). You find it in the environment normally, but at much lower concentrations.

Incubation process

Why do we have highly purified (regular) water and water with a heavier oxygen isotope? That is the cool part!!! Only microbes that are active use water. Where does the oxygen part of the water go? Partly into their DNA!

In her home lab at Ecoss Alicia will determine how much heavier their DNA has become in the heavy water treatment (so she will compare it to the cores that had the regular water). Those that have become much heavier are those that grew the fastest. Those that do not show any differences in DNA density are those that remained dormant. How cool is that: to relate changes in DNA density to their growth!

We have some hypotheses as to what we expect regarding microbial growth …. If you have any, let me know: natasja.van-gestel@ttu.edu.

Let the science begin

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